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UniProt MCP Server

by vitamin3615

The UniProt MCP Server allows language models to fetch protein information from the UniProt database. It can be integrated with Claude Desktop and other MCP-compatible AI applications.

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What is UniProt MCP Server?

The UniProt MCP Server is an interface that enables language models to access and retrieve protein data from the UniProt database using the Model Context Protocol (MCP).

How to use UniProt MCP Server?

To use the server, clone the repository, install dependencies, configure Claude Desktop with the server's command and arguments, and then restart Claude Desktop. You can then ask questions about proteins within Claude Desktop.

Key features of UniProt MCP Server

  • Search UniProt

  • Get Protein Details

  • Get Protein Sequences

  • Get Protein Functions

  • Get Protein Structures

Use cases of UniProt MCP Server

  • Finding proteins related to a disease

  • Retrieving the sequence of a specific protein

  • Determining the functions of a protein

  • Identifying known 3D structures for a protein

FAQ from UniProt MCP Server

What is UniProt?

UniProt is a comprehensive resource for protein sequence and annotation data.

What is MCP?

MCP (Model Context Protocol) is a protocol that allows language models to interact with external tools and data sources.

How do I install the server?

Clone the repository, create a virtual environment, install dependencies using pip, and configure Claude Desktop to use the server.

How do I test the server?

Run the server_health_check.py and test_server.py scripts to verify functionality and API connectivity.

What if I encounter errors during setup?

Ensure that all dependencies are correctly installed, the server script is executable, and the Claude Desktop configuration is accurate. Consult the documentation for troubleshooting steps.